Are Companies having trouble implementing Intune?

Yes — many companies do face challenges when implementing Microsoft Intune, especially if they don’t have prior experience with modern device management or cloud-based IT systems.

Here are the most common difficulties businesses encounter during Intune implementation:

⚠️ 1. Lack of In-House Expertise

  • Many businesses lack staff with experience in modern endpoint management or Microsoft 365 admin tools.
  • Misconfigured policies can lead to access issues, app failures, or security gaps.

⚙️ 2. Complex Setup and Configuration

  • Intune has a lot of moving parts: device compliance policies, conditional access, app protection, Windows Autopilot, etc.
  • Poor initial planning can result in devices not enrolling properly or users being locked out of resources.

🔄 3. Transition from Legacy Systems

  • Migrating from traditional on-prem tools (like Active Directory and Group Policy) to Intune can be complex.
  • Businesses often struggle with co-management (running Intune and SCCM at the same time).

📱 4. BYOD (Bring Your Own Device) Challenges

  • Intune supports BYOD, but balancing security with user privacy is tricky.
  • If not clearly communicated, employees may resist enrolling personal devices.

🛠 5. Policy Conflicts and Over-Engineering

  • It’s easy to overcomplicate with too many overlapping compliance, configuration, or app policies.
  • This can slow down device performance or cause user frustration.

🔒 6. Conditional Access Confusion

  • Conditional Access policies are powerful but easy to misconfigure.
  • A mistake here can lock users out of their apps or email.

🧩 7. Integration with Other Tools

  • Integrating Intune with third-party antivirus, VPNs, or MDMs can be tricky and sometimes unsupported.

✅ How to Avoid These Issues:

  • Start small: Pilot Intune with a test group before a full rollout.
  • Use Microsoft’s Intune Deployment Guide or a certified Microsoft partner.
  • Take advantage of training resources or Microsoft FastTrack (free with some licenses).
  • Keep configurations simple and well-documented.

Final Thought:

While Intune is a powerful tool, poor planning or rushed implementation can create major headaches. Companies that take a phased, well-informed approach typically see much better results and long-term value.

Would you like a checklist or a sample rollout plan for Intune?

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